Pandurang Kolekar

​

• Davis E*, Sun Y*, Liu Y*, Kolekar P*, Shao Y, Szlachta K, Mulder H, Ren D, Rice S, Wang Z, Nakitandwe J, Gout A, Shaner B, Hall S, Robison L, Pounds S, Klco J, Easton J, Ma X. (2021) SequencErr: measuring and suppressing sequencer errors in next generation sequencing data. Genome Biology, 22(1):37. doi: 10.1186/s13059-020-02254-2. PMID: 33487172 (*: Co-First author)

​​

• Balaji SA, Shanmugam A, Chougule A, Sridharan S, Prabhash K, Arya A, Chaubey A, Hariharan A, Kolekar P, Sen M, Ravichandran A, Katragadda S, Sankaran S, Bhargava S, Kulkarni P4, Rao S, Sunkavalli C, Banavali S, Joshi A, Noronha V, Dutt A, Bahadur U, Hariharan R, Veeramachaneni V, Gupta V. (2018) Analysis of solid tumor mutation profiles in liquid biopsy. Cancer Medicine, 00:1–9. https://doi.org/10.1002/cam4.1791 PMID: 30264478

 

• Jigisha Anupama, Margherita Francescatto, Farzana Rahman, Nazeefa Fatima, Dan Deblasio, Avinash Kumar Shanmugam, Venkata Satagopam, Alberto Santos, Pandurang Kolekar, Magali Michaut, Emre Guney. (2018) The ISCB Student Council Internship Program: Expanding computational biology capacity worldwide. PLoS computational biology, 14(1):e1005802. doi: 10.1371/journal.pcbi.1005802. PMID: 29346365

 

• Parulekar NN, Kolekar PS, Jenkins A, Kleiven S, Utkilen H, Johansen A, Sawant S, Kulkarni-Kale U, Kale M, Sæbø M. (2017) Characterization of bacterial community associated with phytoplankton bloom in a eutrophic lake in South Norway using 16S rRNA gene amplicon sequence analysis. PLoS One. 12(3):e0173408. doi: 10.1371/journal.pone.0173408. PMID: 28282404

 

• Waman VP, Kolekar PS, Ramtirthkar MR, Kale MM, Kulkarni-Kale U. (2016). Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes. PeerJ. 4:e2326. doi: 10.7717/peerj.2326. PMID: 27635316 

 

• Kolekar PS, Pataskar A, Kulkarni-Kale U, Pal JK, Kulkarni A. (2016). IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES). Scientific Reports, 6:27436. doi: 10.1038/srep27436. PMID: 27264539

 

• Kolekar PS, Waman VP, Kale MM, Kulkarni-Kale U. (2016). RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach. PLoS ONE, 11(2):e0149350. doi:10.1371/journal.pone.0149350. PMID: 26870949

 

• Waman VP, Kolekar PS, Kale MM, Kulkarni-Kale U. (2014). Population Structure and Evolution of Rhinoviruses. PLoS ONE, 9(2): e88981. doi:10.1371/journal.pone.0088981 PMID: 24586469

 

• Kolekar PS, Hake N, Kale MM, Kulkarni-Kale U. (2014). WNV Typer: A server for genotyping of West Nile viruses using an alignment-free method based on a return time distribution. Journal of Virological Methods, 198:41-55. PMID: 24388930

 

• Kolekar PS, Kale MM, Kulkarni-Kale U. (2012).  Alignment-free distance measure based on return time distribution for sequence analysis: Applications to clustering, molecular phylogeny and subtyping. Molecular Phylogenetics and Evolution, 65(2):510-522. PMID: 22820020

 

• Kolekar PS, Kale MM, Kulkarni-Kale U. (2011). Genotyping of Mumps viruses based on SH gene: Development of a server using alignment-free and alignment-based methods. Immunome Research, 7(3):1-7. Publisher's Full Text

 

• Pandurang Kolekar, Mohan Kale and Urmila Kulkarni-Kale (2011). Molecular Evolution & Phylogeny: What, When, Why & How?, Computational Biology and Applied Bioinformatics, Heitor Silverio Lopes and Leonardo Magalhães Cruz (Ed.), ISBN: 978-953-307-629-4, InTech, Available from: Publisher's Full Text

 

• Kolekar PS, Kale MM, Kulkarni-Kale U. “Subtyping of Dengue Viruses using Return Time Distribution based Appproach”. Available from Nature Precedings <http://dx.doi.org/10.1038/npre.2011.5590.1> (2011)

 

• Kolekar PS, Kale MM, Kulkarni-Kale U. (2010). 'Inter-Arrival Time' Inspired Algorithm and its Application in Clustering and Molecular Phylogeny. AIP Conference Proceedings, 1298(1): 307-312. Abstract